| Protein function and structure |
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| Cofactory | Identification of Rossmann folds and prediction of FAD, NAD and NADP specificity | Rossmann折叠的鉴定及FAD、NAD和NADP特异性的预测 |
| DeepTMHMM | Prediction of transmembrane helices in proteins | 蛋白质跨膜螺旋的预测 |
| NetSolP | Prediction of solubility and usability of proteins expressed in E. coli | 大肠杆菌中表达蛋白质的溶解度和可用性预测 |
| NetSurfP | Protein secondary structure and relative solvent accessibility | 蛋白质二级结构和相对溶剂可及性 |
| NetTurnP | Amino acid predection in β-turns and β-turn types in proteins | 蛋白质β-转向和β-转向类型中的氨基酸预作用 |
| SigniSite | Identification of residue-level genotype-phenotype correlations in protein multiple sequence alignments | 蛋白质多序列比对中残基水平基因型-表型相关性的鉴定 |
| TMHMM | Prediction of transmembrane helices in proteins | 蛋白质跨膜螺旋的预测 |
| VarDom | Domains in the malaria antigen family PfEMP1 | 疟疾抗原家族PfEMP1中的结构 |
| VirtualPulldown | Create protein physical interaction networks using the InWeb 3.0/5.0 inferred human interactome | 使用InWeb 3.0/5.0推断的人类交互技术创建蛋白质物理交互网络 |
| DistanceP | Predicts protein distance constraints | 预测蛋白质距离限制 |
| Protein sorting |
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| DeepLoc | Prediction of eukaryotic protein subcellular localization using deep learning | 利用深度学习预测真核蛋白质亚细胞定位 |
| DeepLocPro | Prediction of prokaryotic protein subcellular localization using deep learning | 利用深度学习预测原核蛋白亚细胞定位 |
| LipoP | Signal peptidase I & II cleavage sites in gram- bacteria | 革兰氏细菌中信号肽酶I和II的切割位点 |
| NetNES | Leucine-rich nuclear export signals (NES) in eukaryotic proteins | 真核蛋白质中富含亮氨酸的核输出信号（NES） |
| SecretomeP | Prediction of non-classical protein secretion | 非经典蛋白质分泌的预测 |
| SignalP | Prediction of Signal Peptides and their cleavage sites in all domains of life | 信号肽及其切割位点在生命各个领域的预测 |
| TargetP | Subcellular location of proteins: mitochondrial, chloroplastic, secretory pathway, or other | 蛋白质的亚细胞定位：线粒体、叶绿体、分泌途径或其他 |
| TatP | Presence and location of Twin-arginine signal peptides | 双精氨酸信号肽的存在和定位 |
| Miscellaneous |
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| AnOxPePred | Prediction of antioxidative properties of peptides using convolutional neural network | 用卷积神经网络预测肽的抗氧化性能 |
| Barracoda | Analysing DNA barcode sequencing data | 分析DNA条形码测序数据 |
| HaploCart | HaploCart is a human haplogroup prediction algorithm for NGS data or mitogenomes in FASTA format | HaploCart是FASTA格式的NGS数据或有丝分裂基因组的人类单倍群预测算法 |
| TumorTracer | Tissue of origin of tumors from genomics data | 从基因组学数据看肿瘤起源组织 |
| pHSol | pH-dependent aqueous solubility of druglike molecules | 类药物分子的pH依赖性水溶性 |
